PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_444DFA94E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1070aa    MW: 119613 Da    PI: 6.3776
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_444DFA94E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-2271172199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F
  Traes_6BS_444DFA94E.2  71 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 157
                            99******************************9999986.************************************************ PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++++l+++++r+
  Traes_6BS_444DFA94E.2 158 V--RDEKQQLLLGIRRA 172
                            *..5688889****997 PP

2Auxin_resp1156.9e-38197280183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  Traes_6BS_444DFA94E.2 197 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 280
                            799********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-4160200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-3963186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-1870162No hitNo description
PfamPF023623.3E-2071172IPR003340B3 DNA binding domain
SMARTSM010191.1E-2171173IPR003340B3 DNA binding domain
PROSITE profilePS5086311.44871173IPR003340B3 DNA binding domain
PfamPF065076.5E-33197280IPR010525Auxin response factor
PfamPF023094.0E-89341022IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479371021IPR000270PB1 domain
SuperFamilySSF542772.65E-69511016No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MQKDVEAHVP SYPNLPSKLI CLLHSVTLQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA  60
LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE LQARDIHDNV  120
WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGVLAAAAHA SANTSPFTIF YNPRASPTEF VIPFAKYQKA MYSNQISLGM  240
RFRMMCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE RRNRVSIWEI  300
EPLAAPFFIC PQPFFGVKRP RQLDDESLEM ESLLKRAMPW LGEEVCIKDP QTQSVTMPGL  360
SLVQWMNMNR QQSSSLASTA MQSEYYRSAS NPAMQNIGAA DLARQLYMQN HLLQQNSMQF  420
NPPKLHQQMK PINDLSNAAL PLNQLGAIRN HQDQKQDQQR QQQSSIQAIP LSQAQPQTNN  480
VQAQVILQNQ MQQQQQQKQP PPSPTQNQHG SSGQHLLQSH QLQDQNLQMQ QQQLLLHQQL  540
QQQQQQQLNK LPGQLANLAS QQTQLSEQEL HLQLLQKLQQ QSLMSQSAVT LSRLPIIQEQ  600
QNFLVDMQQQ LSNSHSLAQQ QVMPQQDCRT SSLQTTQLPP PIQQEQQQQK PSQKQVAPTY  660
VSEAAFAQIS STSVIPKTGN TMIVPGAAQS AVTEEIPSCS TSPSTANGNH LAQPTIGRND  720
HCKVSTEKVP HSIAQMSILT PIEAVSVTPV TTKELPKLNN GVKSSAITSK LPNVVSGLQN  780
FMNNALPTDN LETASSATSL WPSQTDGLLH QGFATSNFNQ HQMFKDELPD VEIQGVDPSN  840
SALFGMNNDG PLGFPMETEG LLENALDSVK YQNHFSTDDE NNYQMQKDAR QEISTSMVSQ  900
SFGQSDMAFN SIDSAINDGA LMNRSSWPPA APPQRMRTFT KVYKRGAVGR SIDIGRFSGY  960
GELNQALARM FGIEGQLEDR QRIGWKLVYT DHEDDVLLLG DDPWEEFVNC VKCIRILSPQ  1020
EVQKMSLDGD LGSNVLPNQA CSSSDGGNTW KPRYEQNSGN PSIGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-137230189388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688452.10.0PREDICTED: auxin response factor 5, partial
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLW5GQ720.0W5GQ72_WHEAT; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.21e-176ARF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]